Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFK99557.1Xylose isomerase domain-containing protein TIM barrel. (386 aa)    
Predicted Functional Partners:
EFK99558.1
Hydrolase.
 
    0.949
EFK99559.1
Sugar phosphate isomerase/epimerase.
 
     0.931
EFK99560.1
Putative isomerase.
 
     0.925
EFK99556.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.904
EFL03599.1
Sugar phosphate isomerase/epimerase; Overlaps another CDS with the same product name.
 
     0.796
EFL03623.1
Transcriptional regulator.
 
  
 0.793
EFK99624.1
Glycosyl hydrolase; Truncated CDS.
 
  
  0.792
EFL03600.1
Hydrolase.
 
    0.790
EFL03596.1
Glycosyl hydrolase.
 
  
 0.789
EFL03602.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.789
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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