Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99586.1Lipid A export permease/ATP-binding protein MsbA; Overlaps another CDS with the same product name. (577 aa)    
Predicted Functional Partners:
EFK99587.1
Lipid A export permease/ATP-binding protein MsbA; Overlaps another CDS with the same product name.
 
  
 
0.935
EFK98798.1
Glycine betaine ABC transport system permease.
     
  0.817
EFL01170.1
ABC transporter ATP-binding protein.
  
 
  0.808
EFL02993.1
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.
 
   
 
0.806
EFK99585.1
Xylulose kinase; Truncated CDS.
       0.759
EFK98985.1
ABC transporter ATP-binding protein.
   
 0.718
EFL03762.1
Beta keto-acyl synthase; Truncated CDS; unextendable partial coding region.
   
 0.707
EFL00079.1
Type II beta-Tyr adenylation domain-containing protein.
  
 0.704
EFK99584.1
Secreted protein.
       0.651
EFL03871.1
Lipid A export permease/ATP-binding protein MsbA.
    
  0.639
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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