STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK99587.1Lipid A export permease/ATP-binding protein MsbA; Overlaps another CDS with the same product name. (642 aa)    
Predicted Functional Partners:
EFK99586.1
Lipid A export permease/ATP-binding protein MsbA; Overlaps another CDS with the same product name.
 
    
0.844
EFL00079.1
Type II beta-Tyr adenylation domain-containing protein.
  
 0.809
EFL03762.1
Beta keto-acyl synthase; Truncated CDS; unextendable partial coding region.
  
 0.612
EFL01170.1
ABC transporter ATP-binding protein.
  
 
 
0.589
EFK99585.1
Xylulose kinase; Truncated CDS.
       0.551
EFL03763.1
Beta keto-acyl synthase; Truncated CDS.
   
 0.485
EFL03359.1
Amino acid adenylation.
  
 
 0.457
EFL03360.1
Virginiamycin S synthetase.
 
 
 0.457
EFL00822.1
Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.455
EFL00103.1
Predicted protein.
  
 
  0.454
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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