Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99606.1Conserved hypothetical protein; Unextendable partial coding region. (340 aa)    
Predicted Functional Partners:
EFK99605.1
Conserved hypothetical protein.
 
     0.943
EFK99604.1
Methyltransferase.
 
     0.869
EFK99607.1
Conserved hypothetical protein.
 
     0.854
EFK99608.1
Dehydrogenase.
 
     0.823
EFK98415.1
Conserved hypothetical protein.
  
     0.466
EFL02287.1
Conserved hypothetical protein.
  
     0.459
EFK99602.1
Secreted protein.
  
     0.428
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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