Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99638.1Peptidase S1 and S6. (522 aa)    
Predicted Functional Partners:
EFK99637.1
Predicted protein.
       0.714
EFL01047.1
Conserved hypothetical protein.
  
     0.543
EFK99636.1
Conserved hypothetical protein.
       0.521
EFL04275.1
Secreted protein.
  
     0.497
EFK98221.1
Aminoglycoside phosphotransferase.
  
     0.487
EFL03696.1
Aromatase.
  
     0.476
EFK98945.1
Glycohydrolase.
  
     0.472
EFK99639.1
Conserved hypothetical protein.
       0.440
EFK99635.1
Predicted protein.
       0.435
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.402
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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