Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99650.1Conserved hypothetical protein. (144 aa)    
Predicted Functional Partners:
EFK99648.1
Secreted protein.
 
 
 0.998
EFK99656.1
Phage tail sheath protein.
 
 
 0.998
EFK99649.1
Conserved hypothetical protein.
 
 
 0.997
EFK99652.1
Peptidoglycan-binding LysM.
 
 
 0.995
EFK99653.1
Phage tail protein.
 
   0.992
EFK99651.1
Rhs element Vgr protein.
 
  
 0.962
EFK99658.1
AAA ATPase.
 
   
 0.929
EFK99654.1
Phage tail protein.
 
     0.797
EFK99659.1
Conserved hypothetical protein.
 
   
 0.792
EFK98360.1
Secreted chitinase.
  
    0.789
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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