STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK99865.1RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (224 aa)    
Predicted Functional Partners:
EFK99864.1
Conserved hypothetical protein.
 
     0.825
EFL01351.1
Sigma-70 region 2 domain-containing protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.766
EFL00154.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.759
EFL01746.1
Transcription initiation factor sigma E; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.729
EFL01135.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.702
EFL00207.1
ECF sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.591
EFK99863.1
Integral membrane protein.
 
     0.546
EFL03244.1
Lipoprotein.
  
   0.545
EFK99866.1
TetR family transcriptional regulator.
       0.516
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.499
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.