Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99956.1Transcriptional regulator. (403 aa)    
Predicted Functional Partners:
EFL00732.1
PTS system, sucrose-specific IIBC component.
  
 0.896
EFL03729.1
Hypothetical protein.
  
     0.752
EFK99957.1
Predicted protein.
       0.714
EFK99959.1
Glycoside hydrolase, family 39.
       0.553
EFK98581.1
Mannose-1-phosphate guanyltransferase.
  
 
 0.479
EFL02273.1
PTS system, N-acetylglucosamine-specific IIBC component.
   
  0.473
EFL02274.1
Phosphotransferase system IIB component.
   
  0.473
EFL03419.1
Sugar kinase.
  
  
 
0.461
EFK99973.1
Polyphosphate glucokinase.
  
  
 0.460
EFK99283.1
Glucokinase.
  
  
 
0.457
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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