Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00057.1Sensory box/GGDEF family protein. (535 aa)    
Predicted Functional Partners:
EFL02965.1
Two-component system sensor kinase.
  
 0.998
EFL02787.1
Integral membrane phosphodiesterase; Truncated CDS; unextendable partial coding region.
 
0.996
EFL01120.1
Diguanylate cyclase; Unextendable partial coding region.
 
 
 0.980
EFL01366.1
Diguanylate cyclase.
 
 0.931
EFL01653.1
Diguanylate cyclase.
 
 0.931
EFL00134.1
Secreted protein.
 
0.924
EFK98398.1
Multi-sensor signal transduction histidine kinase.
    
 0.861
EFL00836.1
Regulatory protein.
  
 0.860
EFL04186.1
Regulatory protein.
  
 0.860
EFL03915.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.804
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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