Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00387.1Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
EFL02965.1
Two-component system sensor kinase.
   
 0.987
EFL00388.1
Conserved hypothetical protein.
       0.888
EFL00389.1
Conserved hypothetical protein.
 
     0.815
EFL00390.1
Conserved hypothetical protein.
 
  
0.799
EFL00836.1
Regulatory protein.
   
 0.797
EFL04186.1
Regulatory protein.
   
 0.797
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.762
EFL01127.1
Predicted protein.
 
 
 0.760
EFL01120.1
Diguanylate cyclase; Unextendable partial coding region.
   
 0.688
EFL02120.1
Alpha-mannosidase.
  
    0.641
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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