Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00414.1Conserved hypothetical protein. (69 aa)    
Predicted Functional Partners:
EFL00415.1
Conserved hypothetical protein.
 
     0.703
EFL00416.1
Helix-turn-helix domain-containing protein.
 
     0.661
EFL01011.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
  
     0.634
EFL00413.1
Predicted protein.
       0.561
EFL01947.1
Conserved hypothetical protein.
  
     0.541
EFL02616.1
Conserved hypothetical protein.
  
     0.528
EFL00956.1
NsdA.
  
     0.527
EFL00656.1
Transcriptional regulator.
  
     0.515
EFL03214.1
Conserved hypothetical protein.
  
     0.512
EFL01575.1
Transcriptional regulator.
  
     0.456
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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