Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00415.1Conserved hypothetical protein. (62 aa)    
Predicted Functional Partners:
EFL00416.1
Helix-turn-helix domain-containing protein.
 
     0.946
EFL02464.1
Conserved hypothetical protein.
  
     0.744
EFL00414.1
Conserved hypothetical protein.
 
     0.703
EFL01942.1
Conserved hypothetical protein.
  
     0.696
EFL01947.1
Conserved hypothetical protein.
  
     0.695
EFL01946.1
Conserved hypothetical protein.
  
     0.693
EFL01943.1
Conserved hypothetical protein.
  
     0.680
EFK99510.1
Conserved hypothetical protein.
  
     0.644
EFL01945.1
Conserved hypothetical protein.
  
     0.632
EFL02462.1
Conserved hypothetical protein.
  
     0.606
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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