Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00418.1Conserved hypothetical protein; Truncated CDS. (102 aa)    
Predicted Functional Partners:
EFL00417.1
Conserved hypothetical protein.
       0.773
EFL00419.1
Predicted protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.561
EFL00420.1
Conserved hypothetical protein.
       0.561
EFL00415.1
Conserved hypothetical protein.
       0.466
EFL00416.1
Helix-turn-helix domain-containing protein.
       0.466
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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