Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00438.1Peptidoglycan-binding domain 1 protein. (282 aa)    
Predicted Functional Partners:
EFL04106.1
Conserved hypothetical protein.
  
     0.632
EFK98191.1
Tetracycline resistance protein.
  
     0.569
EFL01201.1
Alanine racemase domain-containing protein.
  
     0.539
EFL00530.1
Conserved hypothetical protein.
  
     0.538
EFL00437.1
Lipoprotein.
       0.530
EFK99208.1
Predicted protein.
  
     0.514
EFL01336.1
Integral membrane protein.
  
     0.513
EFL00436.1
Nucleoside triphosphate pyrophosphohydrolase.
       0.504
EFL00439.1
Lipoprotein.
       0.493
EFL03111.1
Glycosyl hydrolase.
  
     0.476
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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