Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00443.1Peptidoglycan binding domain-containing protein. (542 aa)    
Predicted Functional Partners:
EFL00441.1
ABC transporter.
 
     0.970
EFL00442.1
Cell division ATP-binding protein FtsE.
 
     0.907
EFL03570.1
Conserved hypothetical protein.
     
  0.485
EFL00440.1
Conserved hypothetical protein.
       0.479
EFL00444.1
Conserved hypothetical protein.
       0.446
EFK99478.1
Conserved hypothetical protein.
  
     0.436
EFL02070.1
Conserved hypothetical protein.
  
     0.431
EFK98154.1
DNA binding protein.
  
     0.423
EFK98155.1
Conserved hypothetical protein.
  
     0.408
EFK99651.1
Rhs element Vgr protein.
 
  
  0.400
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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