Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00450.1Helix-turn-helix domain-containing protein. (273 aa)    
Predicted Functional Partners:
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
   0.779
EFK99125.1
Regulatory protein.
  
     0.773
EFL00451.1
Regulatory protein.
       0.773
EFL01703.1
Regulatory protein.
  
     0.772
EFK99615.1
Conserved hypothetical protein.
  
     0.771
EFL00329.1
Conserved hypothetical protein.
  
     0.771
EFL02050.1
Conserved hypothetical protein.
  
     0.771
EFL02090.1
Conserved hypothetical protein.
  
     0.771
EFL02091.1
Conserved hypothetical protein.
  
     0.771
EFL03740.1
Conserved hypothetical protein.
  
     0.771
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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