Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00458.1Secreted beta-lactamase. (303 aa)    
Predicted Functional Partners:
EFL04023.1
Beta-lactamase.
 
  
  0.936
EFL00459.1
LysR family transcriptional regulator.
 
     0.927
EFL00536.1
Penicillin acylase.
     
  0.848
EFL00460.1
Secreted penicillin binding protein.
    
 0.677
EFL03310.1
Integral membrane protein.
  
     0.564
EFL02411.1
Conserved hypothetical protein.
  
     0.439
EFL03548.1
Carboxylpeptidase.
 
  
  0.436
EFL01714.1
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
     
  0.428
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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