Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL00512.1Tetratricopeptide TPR_2 repeat protein. (176 aa)    
Predicted Functional Partners:
EFL02965.1
Two-component system sensor kinase.
   
 0.936
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.846
EFL00812.1
WD-repeat protein.
   
  0.821
EFK99350.1
Predicted protein.
   
  0.803
EFL02840.1
Heat shock protein.
   
  0.803
EFK97982.1
Calcium binding protein.
    
  0.792
EFK99812.1
Calcium binding protein.
    
  0.792
EFL02517.1
ATP-dependent DNA helicase PcrA.
   
  0.788
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.761
EFK98762.1
alanyl-tRNA synthetase.
   
  0.761
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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