STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL00553.1Extradiol ring-cleavage dioxygenase III subunit B. (254 aa)    
Predicted Functional Partners:
EFK98351.1
Phenylacetic acid degradation NADH oxidoreductase PaaE.
     
 0.701
EFL02144.1
Ferredoxin.
     
 0.701
EFL00558.1
Secreted protein.
     
 0.697
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.654
EFL00554.1
MarR family transcriptional regulator.
    
 0.647
EFL00844.1
Isomerase.
  
  
 0.552
EFL04007.1
Pirin domain-containing protein domain-containing protein; Belongs to the pirin family.
 
  
 0.548
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.526
EFL00077.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component.
  
 
 0.511
EFL03431.1
Amidohydrolase.
    
 0.489
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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