Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00624.1Conserved hypothetical protein. (121 aa)    
Predicted Functional Partners:
EFL00623.1
Predicted protein.
       0.796
EFL00611.1
Predicted protein.
       0.545
EFL00612.1
Conserved hypothetical protein.
       0.545
EFL00613.1
Predicted protein.
       0.545
EFL00614.1
Conserved hypothetical protein.
       0.545
EFL00615.1
Conserved hypothetical protein.
       0.545
EFL00616.1
DNA polymerase III subunit epsilon.
       0.545
EFL00617.1
Conserved hypothetical protein.
       0.545
EFL00618.1
Conserved hypothetical protein.
       0.545
EFL00619.1
Conserved hypothetical protein.
       0.545
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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