EFL00950.1 protein (Streptomyces sp. SPB78) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EFL00950.1

Predicted protein. (414 aa)

Predicted Functional Partners:

EFL00079.1

0.720

EFL00951.1

0.702

EFL02517.1

0.658

EFL00822.1

0.654

glgB

0.604

EFL03290.1

0.604

EFK98581.1

0.592

EFL00952.1

0.530

EFL00953.1

0.530

EFL00955.1

0.530

Your Current Organism:

Streptomyces sp. SPB78

NCBI taxonomy Id: 591157
Other names: S. sp. SPB78

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFK98581.1	EFL00079.1	SSLG_00639	SSLG_02137	Mannose-1-phosphate guanyltransferase.	Type II beta-Tyr adenylation domain-containing protein.	0.782
EFK98581.1	EFL00950.1	SSLG_00639	SSLG_03008	Mannose-1-phosphate guanyltransferase.	Predicted protein.	0.592
EFK98581.1	EFL00955.1	SSLG_00639	SSLG_03013	Mannose-1-phosphate guanyltransferase.	Predicted protein.	0.592
EFK98581.1	EFL03290.1	SSLG_00639	SSLG_05348	Mannose-1-phosphate guanyltransferase.	Malto-oligosyltrehalose trehalohydrolase.	0.724
EFK98581.1	glgB	SSLG_00639	SSLG_04776	Mannose-1-phosphate guanyltransferase.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.724
EFL00079.1	EFK98581.1	SSLG_02137	SSLG_00639	Type II beta-Tyr adenylation domain-containing protein.	Mannose-1-phosphate guanyltransferase.	0.782
EFL00079.1	EFL00822.1	SSLG_02137	SSLG_02880	Type II beta-Tyr adenylation domain-containing protein.	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
EFL00079.1	EFL00950.1	SSLG_02137	SSLG_03008	Type II beta-Tyr adenylation domain-containing protein.	Predicted protein.	0.720
EFL00079.1	EFL00951.1	SSLG_02137	SSLG_03009	Type II beta-Tyr adenylation domain-containing protein.	Carbamoyltransferase.	0.689
EFL00079.1	EFL00955.1	SSLG_02137	SSLG_03013	Type II beta-Tyr adenylation domain-containing protein.	Predicted protein.	0.673
EFL00079.1	EFL02517.1	SSLG_02137	SSLG_04576	Type II beta-Tyr adenylation domain-containing protein.	ATP-dependent DNA helicase PcrA.	0.480
EFL00079.1	EFL03290.1	SSLG_02137	SSLG_05348	Type II beta-Tyr adenylation domain-containing protein.	Malto-oligosyltrehalose trehalohydrolase.	0.809
EFL00079.1	glgB	SSLG_02137	SSLG_04776	Type II beta-Tyr adenylation domain-containing protein.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.809
EFL00822.1	EFL00079.1	SSLG_02880	SSLG_02137	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	Type II beta-Tyr adenylation domain-containing protein.	0.999
EFL00822.1	EFL00950.1	SSLG_02880	SSLG_03008	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	Predicted protein.	0.654
EFL00822.1	EFL00951.1	SSLG_02880	SSLG_03009	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	Carbamoyltransferase.	0.445
EFL00822.1	EFL00955.1	SSLG_02880	SSLG_03013	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	Predicted protein.	0.608
EFL00822.1	EFL03290.1	SSLG_02880	SSLG_05348	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	Malto-oligosyltrehalose trehalohydrolase.	0.584
EFL00822.1	glgB	SSLG_02880	SSLG_04776	Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.584
EFL00950.1	EFK98581.1	SSLG_03008	SSLG_00639	Predicted protein.	Mannose-1-phosphate guanyltransferase.	0.592