Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL00988.1phiRv2 prophage protein. (426 aa)    
Predicted Functional Partners:
EFL00992.1
Relaxase/mobilization nuclease.
 
     0.842
EFL01137.1
Conserved hypothetical protein.
 
  
  0.824
EFL00990.1
Conserved hypothetical protein.
 
     0.823
EFK98658.1
Primosome assembly protein; Truncated CDS; unextendable partial coding region.
     
  0.818
EFK97974.1
Transposase.
     
  0.808
EFL02517.1
ATP-dependent DNA helicase PcrA.
     
  0.808
EFL03239.1
Ribonuclease D.
     
  0.786
EFL01193.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
    
  0.776
EFL01380.1
Predicted protein.
    
  0.776
EFL01616.1
Conserved hypothetical protein.
    
  0.763
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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