Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01003.1Beta-lactamase. (363 aa)    
Predicted Functional Partners:
EFK98888.1
Conserved hypothetical protein.
    0.958
EFL02564.1
Sugar hydrolase.
 
 
  0.898
EFK99915.1
beta-N-acetylhexosaminidase.
 
 
  0.835
EFK99091.1
O-glycosyl hydrolase family 3 protein.
 
 
  0.798
EFL01000.1
Deoxycytidine triphosphate deaminase; Overlaps another CDS with the same product name.
       0.766
EFL01001.1
Deoxycytidine triphosphate deaminase; Overlaps another CDS with the same product name.
       0.766
EFL01002.1
Glycosyl transferase.
       0.766
EFK98798.1
Glycine betaine ABC transport system permease.
     
  0.765
EFK98081.1
Hydrolase.
 
 
  0.746
EFL00996.1
UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
       0.655
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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