Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01009.1CRISPR-associated protein; Overlaps another CDS with the same product name. (242 aa)    
Predicted Functional Partners:
EFL01010.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
 
 0.999
EFL01012.1
CRISPR-associated helicase.
 
 
 0.999
EFL01008.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
 
 0.998
EFL01011.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
 
 0.997
cas1
CRISPR-associated protein cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.984
EFL01006.1
CRISPR-associated protein cas2.
 
  
 0.981
EFL01005.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
 
     0.728
EFL00787.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
 
     0.656
EFL03214.1
Conserved hypothetical protein.
  
     0.501
EFL03213.1
Conserved hypothetical protein.
  
     0.415
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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