Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01159.1Integral membrane protein. (241 aa)    
Predicted Functional Partners:
EFL01160.1
Nodulation ABC transporter NodI.
 
  0.980
EFL01162.1
D-methionine ABC transporter, ATP-binding protein.
 
  0.980
EFL01161.1
Integral membrane protein.
 
     0.968
EFL02481.1
Conserved hypothetical protein.
  
     0.690
EFL02826.1
Conserved hypothetical protein.
  
     0.684
EFL02852.1
Conserved hypothetical protein.
  
     0.598
EFL00906.1
Conserved hypothetical protein.
  
     0.542
EFL01163.1
Short chain dehydrogenase.
       0.524
EFK99896.1
ABC transporter ATP-binding protein; Truncated CDS.
 
  0.513
EFK99281.1
Conserved hypothetical protein.
  
     0.492
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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