Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01197.1Single-stranded DNA-binding protein. (196 aa)    
Predicted Functional Partners:
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
  
 0.970
EFK99217.1
DNA polymerase III subunit alpha.
 
 
 0.933
EFL01639.1
DNA polymerase III subunit delta'.
  
 
 0.933
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
    0.928
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
 
 0.925
EFL02517.1
ATP-dependent DNA helicase PcrA.
 
 0.921
EFK98923.1
DNA polymerase subunit III, alpha; Truncated CDS; unextendable partial coding region; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
   
 0.914
EFK98658.1
Primosome assembly protein; Truncated CDS; unextendable partial coding region.
    
 0.882
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.868
EFL01380.1
Predicted protein.
 
 0.868
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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