Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01274.1Integral membrane protein. (272 aa)    
Predicted Functional Partners:
EFL01275.1
Predicted protein.
       0.773
EFK98976.1
Secreted protein.
       0.530
EFK98977.1
Integral membrane protein.
       0.530
EFK98978.1
Phosphonate C-P lyase system protein PhnK.
       0.530
EFK98979.1
Conserved hypothetical protein.
       0.530
EFL01273.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.461
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.442
EFK98726.1
Precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.421
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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