Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01282.1Predicted protein. (76 aa)    
Predicted Functional Partners:
EFK99667.1
Conserved hypothetical protein.
  
     0.648
EFL01280.1
Helix-turn-helix domain-containing protein.
 
     0.626
EFL01308.1
Conserved hypothetical protein.
  
     0.624
EFL00310.1
Conserved hypothetical protein.
  
     0.587
EFL01281.1
Regulatory protein.
      
0.574
EFK98033.1
Transposase (IS4 family).
  
     0.558
EFL00050.1
Secreted protein.
  
     0.511
EFL01943.1
Conserved hypothetical protein.
  
     0.496
EFL01823.1
Conserved hypothetical protein.
  
     0.486
EFL00052.1
Conserved hypothetical protein.
  
     0.477
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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