Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
apeBAspartyl aminopeptidase. (435 aa)    
Predicted Functional Partners:
EFL02120.1
Alpha-mannosidase.
   
 0.852
EFL03886.1
Alpha-mannosidase.
   
 0.852
EFL01292.1
Conserved hypothetical protein.
       0.807
EFL01289.1
acyl-CoA dehydrogenase.
       0.721
EFL02368.1
Peroxiredoxin.
   
 
 0.663
EFL01288.1
Conserved hypothetical protein.
       0.634
EFL01276.1
Chromosome condensation protein; Belongs to the pirin family.
       0.530
EFL01296.1
Conserved hypothetical protein.
       0.515
EFL01294.1
Alpha/beta hydrolase.
   
   0.489
EFL01293.1
Predicted protein.
       0.463
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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