Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL01302.1Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family. (66 aa)    
Predicted Functional Partners:
EFL01300.1
Transmembrane transporter.
       0.527
EFL01301.1
GntR-family transcriptional regulator.
       0.527
EFL03930.1
Conserved hypothetical protein.
   
    0.515
EFL00513.1
Conserved hypothetical protein.
   
    0.492
EFK98228.1
Organic hydroperoxide resistance protein.
   
    0.431
EFK99835.1
OsmC family protein.
   
    0.431
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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