Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL01318.1Monooxygenase. (388 aa)    
Predicted Functional Partners:
EFL01317.1
tetR-family transcriptional regulator.
 
     0.698
EFK99348.1
Oxygenase.
  
     0.629
EFL01901.1
Secreted protein.
   
  0.548
EFL01902.1
Secreted esterase.
   
  0.548
EFL03032.1
Serine protease.
   
  0.548
EFL04095.1
poly(L-lactic acid) depolymerase.
   
  0.548
EFK99495.1
Conserved hypothetical protein.
    
  0.532
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
     
  0.529
EFK99482.1
DNA-binding protein.
   
 0.528
EFL00199.1
Conserved hypothetical protein.
   
  0.522
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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