Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01693.1abaA. (138 aa)    
Predicted Functional Partners:
EFL01694.1
Conserved hypothetical protein.
       0.773
EFL02737.1
Regulatory protein.
  
   0.757
EFK99127.1
Regulatory protein.
  
   0.685
EFK99353.1
Anti-sigma factor.
  
   0.630
EFL01695.1
Conserved hypothetical protein.
 
     0.630
EFL02787.1
Integral membrane phosphodiesterase; Truncated CDS; unextendable partial coding region.
  
 
 0.603
EFL03457.1
Anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.597
EFL02670.1
Anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.594
EFL03179.1
Regulatory protein.
  
   0.565
EFL01632.1
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   0.550
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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