Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01976.1Xis. (63 aa)    
Predicted Functional Partners:
EFL01975.1
Site-specific recombinase Int.
 
   
 0.968
EFK99171.1
Glutamate synthase(NADPH) large subunit.
    
  0.774
EFL01124.1
Replication initiation protein; Unextendable partial coding region.
 
   
 0.728
EFL01956.1
Oxidoreductase.
     
 0.698
EFL01115.1
Plasmid transfer protein.
 
   
 0.690
EFL01652.1
Conserved hypothetical protein.
  
     0.662
EFK99987.1
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.645
EFL03534.1
methylmalonyl-CoA mutase, coenzyme B12-dependent alpha subunit.
     
  0.645
EFL04321.1
Conserved hypothetical protein.
  
     0.638
EFL01733.1
L-aspartate oxidase.
     
  0.620
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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