Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL01987.1Conserved hypothetical protein. (280 aa)    
Predicted Functional Partners:
EFL01986.1
Diguanylate cyclase.
       0.773
EFL01988.1
Conserved hypothetical protein.
       0.773
EFL01989.1
Conserved hypothetical protein.
       0.773
EFL01985.1
Conserved hypothetical protein.
       0.661
EFL01984.1
Integral membrane protein.
       0.541
EFL01983.1
Conserved hypothetical protein.
       0.506
EFL01982.1
TraB.
       0.497
EFL01990.1
Conserved hypothetical protein.
       0.461
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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