EFL02326.1 protein (Streptomyces sp. SPB78) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EFL02326.1

Ectoine/hydroxyectoine ABC transporter, permease EhuC. (244 aa)

Predicted Functional Partners:

EFL02324.1

0.994

EFL02325.1

0.986

EFL02328.1

0.977

EFL02990.1

0.964

EFK98509.1

0.952

EFK98931.1

0.952

EFL02594.1

0.952

EFL02993.1

0.951

EFL03488.1

0.951

EFL02596.1

0.902

Your Current Organism:

Streptomyces sp. SPB78

NCBI taxonomy Id: 591157
Other names: S. sp. SPB78

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFK98509.1	EFL02325.1	SSLG_00567	SSLG_04383	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	0.952
EFK98509.1	EFL02326.1	SSLG_00567	SSLG_04384	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter, permease EhuC.	0.952
EFK98509.1	EFL02328.1	SSLG_00567	SSLG_04385	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter solute-binding protein.	0.830
EFK98509.1	EFL02596.1	SSLG_00567	SSLG_04654	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Secreted protein; Belongs to the bacterial solute-binding protein 3 family.	0.905
EFK98509.1	EFL02990.1	SSLG_00567	SSLG_05048	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Glutamate transporter permease.	0.955
EFK98931.1	EFL02325.1	SSLG_00990	SSLG_04383	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	0.952
EFK98931.1	EFL02326.1	SSLG_00990	SSLG_04384	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter, permease EhuC.	0.952
EFK98931.1	EFL02328.1	SSLG_00990	SSLG_04385	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter solute-binding protein.	0.829
EFK98931.1	EFL02596.1	SSLG_00990	SSLG_04654	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Secreted protein; Belongs to the bacterial solute-binding protein 3 family.	0.906
EFK98931.1	EFL02990.1	SSLG_00990	SSLG_05048	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Glutamate transporter permease.	0.955
EFL02324.1	EFL02325.1	SSLG_04382	SSLG_04383	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	0.994
EFL02324.1	EFL02326.1	SSLG_04382	SSLG_04384	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter, permease EhuC.	0.994
EFL02324.1	EFL02328.1	SSLG_04382	SSLG_04385	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Ectoine/hydroxyectoine ABC transporter solute-binding protein.	0.979
EFL02324.1	EFL02596.1	SSLG_04382	SSLG_04654	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Secreted protein; Belongs to the bacterial solute-binding protein 3 family.	0.895
EFL02324.1	EFL02990.1	SSLG_04382	SSLG_05048	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	Glutamate transporter permease.	0.951
EFL02325.1	EFK98509.1	SSLG_04383	SSLG_00567	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	0.952
EFL02325.1	EFK98931.1	SSLG_04383	SSLG_00990	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	0.952
EFL02325.1	EFL02324.1	SSLG_04383	SSLG_04382	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	Ectoine/hydroxyectoine ABC transporter, ATP-binding protein.	0.994
EFL02325.1	EFL02326.1	SSLG_04383	SSLG_04384	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	Ectoine/hydroxyectoine ABC transporter, permease EhuC.	0.986
EFL02325.1	EFL02328.1	SSLG_04383	SSLG_04385	Ectoine/hydroxyectoine ABC transporter, permease EhuD.	Ectoine/hydroxyectoine ABC transporter solute-binding protein.	0.977