Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL02343.1D-amino acid deaminase. (422 aa)    
Predicted Functional Partners:
EFL02342.1
D-aminoacylase.
 
   
 0.961
EFL02344.1
Carbohydrate kinase.
 
     0.807
EFL02346.1
Pyrimidine utilization protein C.
 
   
 0.777
EFL03249.1
Pyruvate oxidase; Truncated CDS; unextendable partial coding region; Belongs to the TPP enzyme family.
  
    0.772
EFL03368.1
Pyruvate oxidase; Unextendable partial coding region; Belongs to the TPP enzyme family.
  
    0.772
EFL02345.1
IclR-family transcriptional regulator.
       0.717
EFL00672.1
Oxidoreductase; Unextendable partial coding region.
  
 
  0.681
EFL04050.1
Oxidoreductase.
  
 
  0.681
EFK99425.1
KHG/KDPG aldolase.
    
  0.583
EFK99031.1
Aspartate aminotransferase.
    
  0.563
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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