Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02354.1Predicted protein. (63 aa)    
Predicted Functional Partners:
EFL01856.1
Conserved hypothetical protein.
     
  0.847
EFL02355.1
Conserved hypothetical protein.
       0.813
EFL02356.1
Secreted protein; Overlaps another CDS with the same product name.
       0.765
EFL02357.1
Secreted protein; Overlaps another CDS with the same product name.
       0.765
EFL02353.1
Two-component system response regulator.
       0.673
EFL02352.1
Predicted protein.
       0.619
EFL02358.1
Methyltransferase type 11.
       0.413
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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