Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02464.1Conserved hypothetical protein. (70 aa)    
Predicted Functional Partners:
EFL02463.1
Conserved hypothetical protein.
 
    
0.786
EFL00415.1
Conserved hypothetical protein.
  
     0.744
EFK99667.1
Conserved hypothetical protein.
  
     0.654
EFL02461.1
Transcriptional regulator.
 
     0.636
EFK99510.1
Conserved hypothetical protein.
  
     0.629
EFK98033.1
Transposase (IS4 family).
  
     0.580
EFL02038.1
Conserved hypothetical protein.
  
     0.576
EFL00050.1
Secreted protein.
  
     0.549
EFL00052.1
Conserved hypothetical protein.
  
     0.536
EFL01431.1
Conserved hypothetical protein.
  
     0.495
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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