Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02534.1Secreted protein. (365 aa)    
Predicted Functional Partners:
EFL02533.1
Conserved hypothetical protein.
       0.782
EFL02529.1
Conserved hypothetical protein.
 
     0.709
EFL02532.1
Molybdopterin converting factor, subunit 2.
       0.696
EFL02531.1
NAD-dependent epimerase/dehydratase.
       0.648
EFL02528.1
NUDIX hydrolase.
       0.603
EFK99722.1
DNA polymerase III, delta subunit.
 
     0.556
whiB-5
Sporulation regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.537
whiB-8
Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.513
whiB-7
WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.509
EFL02715.1
ATP-dependent DNA helicase; Truncated CDS.
  
     0.506
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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