Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02670.1Anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (100 aa)    
Predicted Functional Partners:
EFL02964.1
Magnesium or manganese-dependent protein phosphatase.
 
 0.943
EFL01022.1
Magnesium or manganese-dependent protein phosphatase.
  
 0.941
EFL02965.1
Two-component system sensor kinase.
  
 
 0.939
EFL00167.1
Regulatory protein.
 
 0.933
EFK98321.1
Conserved hypothetical protein.
 
  0.916
EFK99127.1
Regulatory protein.
 
  0.916
EFK98368.1
Conserved hypothetical protein.
  
  0.905
EFL03179.1
Regulatory protein.
  
  0.905
EFK98798.1
Glycine betaine ABC transport system permease.
     
  0.850
EFL04082.1
ABC-transporter integral membrane protein.
   
  0.792
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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