Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02728.1Integral membrane protein. (246 aa)    
Predicted Functional Partners:
EFL02727.1
Nodulation ABC transporter NodI.
 
 
  0.978
EFL02729.1
Two-component system sensor kinase.
 
    0.894
EFL01415.1
ABC transporter membrane protein.
  
  
 
0.882
EFL02042.1
ABC transporter integral membrane protein.
  
  
  0.880
EFK99085.1
ABC transporter permease.
  
  
 
0.879
EFL03683.1
Hypothetical protein; FRNA.
  
  
  0.877
EFL02449.1
ABC transporter integral membrane protein.
  
  
  0.874
EFK98834.1
Lipoprotein oligopeptide binding protein.
  
  
  0.872
EFK98835.1
Lipoprotein oligopeptide binding protein.
  
  
  0.872
EFL03889.1
Maltose permease.
  
  
  0.870
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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