Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02739.1Conserved hypothetical protein. (344 aa)    
Predicted Functional Partners:
EFK99605.1
Conserved hypothetical protein.
 
     0.766
EFL02740.1
Magnesium or manganese-dependent protein phosphatase.
       0.513
EFL02741.1
sigma-B negative effector.
       0.513
EFL02742.1
Anti-sigma regulatory factor.
       0.513
EFL02743.1
Anti-sigma-factor.
       0.513
EFL02738.1
Phosphonate C-P lyase system protein PhnK.
       0.499
EFK99602.1
Secreted protein.
  
     0.458
EFL02287.1
Conserved hypothetical protein.
  
     0.451
EFK98415.1
Conserved hypothetical protein.
  
     0.450
EFK99604.1
Methyltransferase.
 
     0.440
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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