Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL02815.1ATP/GTP-binding protein. (193 aa)    
Predicted Functional Partners:
EFL02816.1
Conserved hypothetical protein.
 
  
 0.964
EFL02817.1
Conserved hypothetical protein.
 
   0.956
EFK98806.1
RarB protein.
 
 
 0.918
EFL02813.1
Conserved hypothetical protein.
 
   0.911
EFL02618.1
Conserved hypothetical protein.
 
   0.907
EFL04042.1
Conserved hypothetical protein.
 
 
 0.907
EFK98039.1
RarB.
 
 
 0.906
EFK99468.1
Conserved hypothetical protein.
 
 
 0.904
EFL02818.1
Histidine kinase.
 
    0.889
EFL02812.1
Conserved hypothetical protein.
 
  
 0.848
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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