Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL03010.1Iron transporter. (258 aa)    
Predicted Functional Partners:
EFL03012.1
IucA/IucC.
 
  
  0.944
EFL03011.1
Lysine N-acyltransferase mbtK.
 
 
  0.894
EFL03009.1
Predicted protein.
 
     0.737
EFL00079.1
Type II beta-Tyr adenylation domain-containing protein.
  
 
 0.691
EFL03014.1
ATP-dependent helicase.
       0.664
EFL03203.1
Peptide monooxygenase.
  
  
 0.631
EFK99581.1
Ornithine cyclodeaminase.
  
 
 0.610
EFK98362.1
Von Willebrand factor.
       0.530
EFL03007.1
Secreted protein.
       0.530
EFL00530.1
Conserved hypothetical protein.
  
     0.487
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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