STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL29998.1Aspartate ammonia-lyase. (470 aa)    
Predicted Functional Partners:
EFL34186.1
2-oxoglutarate ferredoxin oxidoreductase.
  
 0.940
EFL34599.1
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.936
EFL33902.1
L-aspartate oxidase.
  
 0.933
EFL32265.1
Citrate (Si)-synthase; Belongs to the citrate synthase family.
     
 0.905
EFL32954.1
Citrate (Si)-synthase; Belongs to the citrate synthase family.
     
 0.905
EFL33863.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
 0.905
argH
Argininosuccinate lyase.
     
 0.898
EFL34218.1
Aspartate aminotransferase.
     
 0.895
EFL35999.1
Aminotransferase.
     
 0.895
EFL32359.1
Ectoine utilization protein EutA; Overlaps another CDS with the same product name.
     
 0.894
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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