STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL30387.1Endo-1,4-beta-xylanase. (1620 aa)    
Predicted Functional Partners:
EFL30944.1
Alpha-arabinofuranosidase I.
 
 0.786
EFL30123.1
Xylanase A.
 
  
 0.742
EFL35739.1
Alpha-arabinofuranosidase II; Belongs to the glycosyl hydrolase 43 family.
   
 0.739
EFL30318.1
Large secreted protein.
 
  
  0.680
EFL32396.1
Secreted endo-beta-1,6-galactanase.
 
 
 0.666
EFL30342.1
Glycosyl hydrolase family 10.
 
  
 0.657
EFL32974.1
Glycoside hydrolase.
 
 
 0.652
EFL30725.1
Glycosyl hydrolase family 10.
 
  
 0.624
EFL30120.1
alpha-L-fucosidase.
  
     0.618
EFL33544.1
Conserved hypothetical protein.
  
 
 0.602
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.