STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL30490.1Lipid A export permease/ATP-binding protein MsbA. (600 aa)    
Predicted Functional Partners:
EFL30423.1
Polyketide synthase subunit.
  
 0.792
EFL33677.1
Cytolysin B transporter.
 
 
 
0.769
EFL36743.1
Lipid A export permease/ATP-binding protein MsbA.
 
 
 
0.749
EFL36742.1
ABC transporter ATP-binding protein.
 
 
 
0.743
EFL30478.1
Phenyloxazoline synthase mbtB.
  
 0.741
EFL30437.1
Polyketide synthase type I.
   
 0.677
EFL30438.1
Predicted protein.
   
 0.677
EFL33833.1
Polyketide synthase I protein; Truncated CDS.
   
 0.677
EFL33834.1
Polyketide synthase type I.
   
 0.677
EFL33837.1
Polyketide synthase.
   
 0.677
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.