STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL30603.1DNA-binding protein. (286 aa)    
Predicted Functional Partners:
EFL30604.1
Conserved hypothetical protein.
 
     0.913
EFL30602.1
Regulatory protein.
 
     0.784
EFL36913.1
Regulator.
  
     0.771
EFL31393.1
Conserved hypothetical protein.
 
     0.769
EFL33965.1
Conserved hypothetical protein.
  
     0.768
EFL31394.1
Regulatory protein.
  
     0.767
EFL33855.1
Regulator.
  
     0.764
EFL36915.1
Conserved hypothetical protein.
 
     0.761
EFL35659.1
Conserved hypothetical protein.
 
     0.760
EFL36281.1
Conserved hypothetical protein.
  
     0.760
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.