STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL30811.1Amino oxidase. (565 aa)    
Predicted Functional Partners:
EFL30812.1
N-carbamoylputrescine amidase.
 
 
 0.992
EFL33938.1
Acetoin dehydrogenase.
   
 0.925
EFL32629.1
Diaminopimelate decarboxylase.
     
 0.886
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.886
EFL35364.1
Diaminopimelate decarboxylase.
     
 0.886
EFL35533.1
orn/DAP/Arg decarboxylase 2.
     
 0.886
EFL29796.1
Saccharopine dehydrogenase.
   
 
  0.883
EFL35682.1
Tyramine oxidase.
  
 
 0.820
EFL30544.1
SNF2/RAD54 family helicase.
    
  0.792
EFL34857.1
Helicase domain-containing protein.
    
  0.792
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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