STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL30966.1Serine protease membrane protein. (400 aa)    
Predicted Functional Partners:
EFL30967.1
Conserved hypothetical protein.
       0.876
EFL34074.1
Cell division FtsK/SpoIIIE.
  
 
 0.778
EFL31354.1
Carboxypeptidase.
  
 0.767
EFL30965.1
Conserved hypothetical protein; Unextendable partial coding region.
       0.762
EFL30380.1
Peptidase S8 and S53.
  
     0.744
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.645
EFL31212.1
Membrane spanning protein.
    
   0.566
EFL33735.1
Conserved hypothetical protein.
    
   0.566
EFL30969.1
Conserved hypothetical protein.
       0.541
EFL29604.1
Alkaline serine protease; Belongs to the peptidase S8 family.
  
  
 
0.526
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.